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Course 'Next Generation Sequencing data analysis'
30 August -
1 September 2017, LUMC
Provisional program 2017
Registration
The 11th edition of this course aims at PhD students, postdocs and
senior researchers who are interested in, planning, or already
working with next-generation sequencing. We welcome researchers from
both the genomics and bioinformatics fields. Currently available
technologies as well as hardware and software solutions will be
presented and discussed. The focus of the course will be on the data
and ways to analyse the data.
We only have facilities to accommodate 60 participants. All
registrants have to send a motivation in the free text field of the
web form in due time. Important are your experience in this field
and the data you have. When we get more registrations we have to
make a selection. In this case, we will inform you before August 20,
2017.
The course is free of charge for participants
from the MGC institutes.
Participants who are member of BioSB pay 175,00. Participants from
the academic world but outside MGC or BioSB pay 250,00.
Participants from outside the academic world pay 500,00. |
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Course
'Safely
working in the Laboratory'
30
August, 2017 in room J1-116, LUMC
PhD
students from the LUMC can register via
'Bedrijfsopleidingen'
PhD
students from Erasmus MC can register via an email to
nivard@lumc.nl
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Course 'Practical
Linux'
https://git.lumc.nl/courses/practical-linux-course
LUMC, Building
1, J1-82 (July and September) or J1-84
Registration form
next edition 12
July
This short and concise hands-on course, designed especially for
researchers, will teach you how to effectively use the Linux command
line interface. After completing this course, attendees will be able
to swiftly start using Linux both on a server, e.g., the LUMC Shark
cluster, as well as on your personal computer. The lessons are
interactive and will take place in a location with computer
facilities.
Goals: - Basic understanding of operating systems - Understand and
navigate the filesystem - Obtain information about files and
directories - Manipulate, i.e., create, delete, move, and rename
files and directories - Inspect and edit file content - Gather disk
storage information - Search for and within files - Manage file and
directory access permissions - Connect to other computers
This year the
course will be given on the following dates: 12 July
(2-5 PM), 4 September (2-5 PM), 11 October (2-5
PM), 1 November (2-5 PM), 6 December (2-5 PM).
Course is free of charge. Please
indicate on the registration form for which date you will subscribe.
By completing this course you will be able to join the following
courses:
- Introduction to the Shark cluster
- Code and Data Management with Git
- Scripting for Life Science Researchers
- Python Programming
There is a maximum of 18 places for each edition of the course
except of 6 April. On 6 April the maximum is 25 places. Should an edition of the course be
oversubscribed then places will be allocated based on a
first-come
first-serve basis. |
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Course 'Code
and Data Management with Git'
https://git.lumc.nl/courses/gitcourse
6 September or
22 November, 2017
Registration form
This course aims at
everyone who works in the Bioinformatics field. We cover a version
control system named git. This system is widely used by software
developers, but can also be used for project management. By keeping
track of all versions, history, etc. collaboration with colleagues
is easy and your analysis will be reproducible.
Knowledge of
Linux is required to attend this course!
This year the
course will be given on the following dates: 6 September (LUMC,
J1-84, 10:30 -
17:00), 22 November (LUMC, J1-83, 9:30 - 16:30).
Course is free of charge. Please indicate on the
registration form for which date you will subscribe.
There is a maximum of 20 places. Should an edition of the course be
oversubscribed then places will be allocated based on a
first-come first-serve basis.
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Course 'Scripting for Life Science Researchers'
https://git.lumc.nl/courses/scriptingcourse
12 - 13
September, 2017 - LUMC, Building 1, J1-83
Registration
form
This course is designed for researchers, including PhD students and
Postdocs, who frequently handle large datasets or large numbers of
files (images, sequence reads, mass spectra etc.) and who need a
more efficient way of working with such data. The goal of the
course is to empower students and researchers with backgrounds in
biology or biomedicine to navigate, manage and perform operations on
files and data and metadata in tabular text formats. The data may be
microscopy images, FASTA sequences, gene ontology files,
chromatograms, mass spectra or tables with data on genes or
proteins. The course is not a general introduction to programming
and will not deal with XML data, Web services or more advanced
topics.
Knowledge of
Linux is required to attend this course!
The
course is free of charge for all personnel from MGC institutes.
Participants from outside these institutes pay 250 including lunch.
There is a maximum of 25 places. Should the course be oversubscribed
then places will be allocated based on a
first-come first-serve basis. |
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Course 'Python Programming'
https://git.lumc.nl/courses/programming-course
18 - 21
September, 2017 - LUMC, Building 1, J1-83
Registration form
The course is targeted at PhD students, Postdocs, or anyone willing
to learn how to program in Python. Students are assumed to have some
experience with programming, but not necessarily in Python, and the
UNIX shell. Knowledge of
Git is required to attend this course! There will be a focus on bioinformatics and programming
to support scientific research in general. The program consists of
four mornings with lessons and some assignments to be done in your
own time (i.e., during the afternoons).
The
course is free of charge for all personnel from MGC institutes.
Participants from outside these institutes pay 450 including lunch.
There is a maximum of 25 places. Should the course be oversubscribed
then places will be allocated based on a
first-come first-serve basis. |
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Course
'GitLab as a Collaborative Working Environment'
https://git.lumc.nl/courses/gitlab-intro-course
LUMC, Building
2, S0-010
22
November, 2017
Registration form
Aimed primarily at LUMC researchers, this short but concise course
consists of an introduction to the LUMC GitLab. The course takes
approximately three hours and provides participants an insight into
how GitLab utilization enhances collaboration and greatly simplifies
project management. The lessons are interactive, thus we encourage
you to bring your own laptop. However, we can also provide you with
a laptop, but please let us know in advance.
Course is free of charge. Please indicate on the
registration form for which date you will subscribe.
There is a maximum of 15 places. Should an edition of the course be
oversubscribed then places will be allocated based on a
first-come first-serve basis. |
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In collaboration with the Research School MolMed
Course
'Basic and Translational Oncology'
23 October 2017 - 27 October 2017
Erasmus MC, Ae-4.06
www.molmed.nl
The postgraduate school Molecular Medicine (MolMed) has been
organizing the Basic and Translational Oncology course for
many years now in narrow cooperation with the school
Medical Genetic Center (MGC) and with contributions from
many speakers from the LUMC. Besides that, many speakers
from the NCI will participate. The course provides a
comprehensive introduction to the field of translational
cancer research. The course is directed primarily at PhD
students and postdocs in MolMed and MGC, but others (e.g.,
students and technicians of LUMC and Erasmus MC) are welcome
too. The maximum number of participants is 40.
The program is set up logically in 5 steps, one step a day:
· Pathology, diagnostics & pathways in cancer
· Biology of the cancer cell: Genetics
· Invasion, metastasis & inflammation
· Tumor Immunology; Clinical practice: targeted
therapies
· Epidemiology of cancer; personalised medicine;
end-of-life interventions
Like last year, the program is enriched with journal
clubs (JCs) on Tuesday and discussion sessions with
course speakers on most days. Publications to be
discussed are announced 2 weeks in advance to all
participants. We expect you to prepare these before the
course starts. The amount of ECTS awarded for the entire
course is 1.8. At the start of the course, participants
will receive a comprehensive reader consisting of recent
papers relevant to the lectures. Give your preferred
JCs in the free text field on the web form. Well send
you the assignments & publications.
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Course fee: For non-commercial participants the
course fee is 750. Discounts:
· PhD students get a 50% discount and
pay 375.
· Participants from the postgraduate
school MolMed and MGC (and one participant from
the group of any speaker) get a 100% discount
and pay 0.
· Master students, get a 50% discount
and pay 375.
· Master students who have to pay the
fee from their personal budget get
a 75% discount and pay 187,50.
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Survival Analysis Course
new!
26 27 June, 2017
Two-day course on medical statistics for MDs, PhD students and MSc
students. The first day consists of a brief introduction to basic
statistical concepts and survival analysis. During day two, more
advanced topics related to survival analysis will be discussed. Aim
of the course is understanding (some of) the essentials of
statistical theory, choosing the appropriate statistical test given
the research question and data, performing the corresponding
statistical analysis and interpreting the resulting statistical
output.
For more information and registration:
www.molmed.nl
NGS in DNA Diagnostics Course
new!
11 13 September, 2017
This course is intended for bioinformaticians, researchers and
molecular & clinical geneticists. The mixed program will appeal to
all those requiring a solid background in the application of NGS
techniques for (routine) genetic diagnosis of a patient. NGS in DNA
diagnostics is a course aimed at Genomic Resequencing in a Medical
Diagnostic Context, i.e. to apply Next Generation Sequencing data as
diagnostic tool in the hospital. Lectures will be accompanied with
hands-on exploration
For more information and registration:
www.molmed.nl
SNP Course XIV: SNPs and Human Diseases
new!
13 17 November, 2017
The analysis of DNA variations, including Single Nucleotide
Polymorphisms (SNPs), is a standard research approach to understand
causes of disease, in particular the so-called complex diseases
such as diabetes, osteoporosis, cancer, Alzheimer disease, etc. The
field is changing fast with large scale projects (Human genome,
dbSNP, HapMap, 1000genomes, ENCODE) and novel technology being
continuously introduced, including Next Generation Sequencing. The
aim of this course is to give a broad introduction in SNP techniques
and applications.
For more information and registration:
www.molmed.nl
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On the 'Boerhaave
CME (Continuing Medical Education)' website several courses for PhD
students and other employees of the LUMC are announced:
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Introduction Genetic Epidemiology:
(once a year)
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Design, Management & Analysis of Clinical trials:
(once a year)
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Advanced Genetic
Association Analysis: (once a year)
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Regression Analysis:
(once a year)
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Using R in Data Analysis:
(once a year)
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Dealing with Conflicting Demands:
(once a year)
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Repeated measurements:
(once a year)
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Basic methods and reasoning in biostatistics: (once a year)
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MEDISCH-GENETISCH CENTRUM ZUID-WEST NEDERLAND
